Barrel-o-Monkeys

Included in this package are the following applications:

alvert- alignment format conversion (and related functionality)

blastmonkey- repetitive online (NCBI) and local BLAST and output parsing

alignmonkey- automated multiple sequence alignment and cleanup

QuASAR- recode a sequence alignment with a reduced alphabet

tresolve- produce a semi-exhaustive list of trees with given constraints

Download Barrel-o-Monkeys here